BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006H07SP1|AL425603
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 1912 0.0
>3x_Contig1386
Length = 5452
Score = 1912 bits (963), Expect = 0.0
Identities = 989/995 (99%), Gaps = 3/995 (0%)
Strand = Plus / Minus
Query: 1 atcctgaagccgagctatcagcagcagttgctgttgaagctcttgaagaagcagaagcca 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 atcctgaagccgagccatcagcagcagttgctgttgaagctcttgaagaagcagaagcca 1941
Query: 61 ttgcgcagggccaagttcctccaagagtcccgttggctgaagaagaagaacaagaaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 ttgcgcagggccaagttcctccaagagtcccgttggctgaagaagaagaacaagaaaatc 1881
Query: 121 caaccggtgtttacaaggccccggaagatgatgctaatgaatacgtcgatccatctcgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 caaccggtgtttacaaggccccggaagatgatgctaatgaatacgtcgatccatctcgtg 1821
Query: 181 aggctagaccagaatcggctgtaagagccttcgaagaagccgaggctattgtccaggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 aggctagaccagaatcggctgtaagagccttcgaagaagccgaggctattgtccaggatg 1761
Query: 241 acgaggaggaaccggtcgatcctaaacgcgaaccaaaacctgaggccgctgtgagagcgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 acgaggaggaaccggtcgatcctaaacgcgaaccaaaacctgaggccgctgtgagagcgt 1701
Query: 301 tcgaagaagccgaggcgattgtccaggacaatgaggagcctccagtggatcctgaagccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 tcgaagaagccgaggcgattgtccaggacaatgaggagcctccagtggatcctgaagccg 1641
Query: 361 aaccttccccggaagaagctgttgaggcattccaagaggccgaagctatcgcaactgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 aaccttccccggaagaagctgttgaggcattccaagaggccgaagctatcgcaactgaga 1581
Query: 421 acccagaagctatttctcctccaccagatatcaattctgcccctcgtgttccattcacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 acccagaagctatttctcctccaccagatatcaattctgcccctcgtgttccattcacac 1521
Query: 481 ccagtggcgccaataaggccggtactgctgcagctacttctggaattgcagcttcaggct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 ccagtggcgccaataaggccggtactgctgcagctacttctggaattgcagcttcaggct 1461
Query: 541 tatttgcccttttcaaacgttcgaagaaaccagagtcctcgaccaaagttgctgcaaatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 tatttgcccttttcaaacgttcgaagaaaccagagtcctcgaccaaagttgctgcaaatg 1401
Query: 601 ccgctgctggcaccgttgttccaggcgatgatgcgccagtggccacccctgaagatccag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 ccgctgctggcaccgttgttccaggcgatgatgcgccagtggccacccctgaagatccag 1341
Query: 661 agttaattgtcagaacacaagaaggctacgtctcgaagtctgtttacgataagttgcaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 agttaattgtcagaacacaagaaggctacgtctcgaagtctgtttacgataagttgcaat 1281
Query: 721 acgacgaggaccagcaccaagccaagttggccctgtactccaaggaacaagatgaaaggt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 acgacgaggaccagcaccaagccaagttggccctgtactccaaggaacaagatgaaaggt 1221
Query: 781 atgawactaaagcccaagagtacgaggaaaagatccaatcaattcaagctgaaattgctg 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 atgaaactaaagcccaagagtacgaggaaaagatccaatcaattcaagctgaaattgctg 1161
Query: 841 aattggacgcgcaaatggaacaggttagattggaacatgaggaaaagttgaagttgaagc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 aattggacgcgcaaatggaacaggttagattggaacatgaggaaaagttgaagttgaagc 1101
Query: 901 aagttgag-aatctcaagcattactagaaactaacgtcaagcacattaacgccaagggtg 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 aagttgagaaatctcaagcattactagaaactaacgtcaagcacattaacgccaagggtg 1041
Query: 960 atctgtac-agcaaactgaag-aawcaagaaccaa 992
|||||||| |||||||||||| || ||||||||||
Sbjct: 1040 atctgtacaagcaaactgaagaaatcaagaaccaa 1006
Score = 113 bits (57), Expect = 6e-25
Identities = 126/149 (84%)
Strand = Plus / Minus
Query: 213 gaagaagccgaggctattgtccaggatgacgaggaggaaccggtcgatcctaaacgcgaa 272
||||||||||||||||| | | || || || |||||||| || ||||| ||||||||
Sbjct: 2136 gaagaagccgaggctatggctgaagacgatgaagaggaaccagttgatccgaaacgcgag 2077
Query: 273 ccaaaacctgaggccgctgtgagagcgttcgaagaagccgaggcgattgtccaggacaat 332
||||| ||||||||||| |||| || || |||||||| ||||| ||||| |||||| |
Sbjct: 2076 ccaaagcctgaggccgcgctgagggcttttgaagaagctgaggcaattgttcaggacgac 2017
Query: 333 gaggagcctccagtggatcctgaagccga 361
|||||||||||||||||||||||||||||
Sbjct: 2016 gaggagcctccagtggatcctgaagccga 1988
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6683
Number of Sequences: 1807
Number of extensions: 6683
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)